做生信分析,做到一定阶段,会发现比拼的不是代码能力,而是资源。
有很多分析的东东,可能都已经发表了。
所以我们需要站在别人的肩膀上。
NAR20年度数据库包括59个是新的,10发表更新过的。
拿走不谢。
Database Name | Short description |
ABCD | AntiBodies chemically defined |
Alliance of Genome Resources | Data united across model organisms |
Animal-ImputeDB | Reference panels and imputation methods for animal genomes |
APAatlas | Human alternative polyadenylation |
BacFITBase | Bacterial genes relevant to host infection |
BBCancer | Blood-based biomarkers for cancer |
CancerGeneNet | Paths from cancer mutations to ‘Hallmark phenotypes’ |
CancerTracer | Tumor heterogeneity in individual patients |
CausalDB | Predicted causal variants from GWAS |
CFEA | Cell-free epigenome atlas |
ChlamDB | Comparative genomics of the Chlamydiae phylum and the PVC superphylum |
CRISPRCasdb | CRISPR arrays and Cas proteins |
DNMIVD | DNA methylation and cancer |
DrLLPS | Liquid–liquid phase separation of proteins |
DrugCombDB | Drug combination data |
ENdb | Experimentally supported enhances in human and mouse |
EuRBPDB | Eukaryotic RNA binding proteins |
EWAS Data Hub | DNA methylation array data and metadata |
ExonSkipDB | Exon skipping |
FoldamerDB | Peptidic foldamers |
Gene4Denovo | Human de novo mutations |
Genus | Topological characteristics of biomolecular structures |
Gephebase | Genotype–phenotype relationships in eukaryotes |
GMrepo | Human gut metagenomics data |
gutMDisorder | Dysbiosis of the gut microbiota |
GWAS Atlas | GWAS studies across seven plants and two animals |
KnockTF | Gene expression following TF knockdown/knockout |
LLPSDB | Liquid–liquid phase separation of proteins |
LnCeVar | lncRNA SNPs affecting ceRNA action |
LncTarD | lncRNA-mediated regulatory mechanisms and disease |
MaGenDB | Functional genomics hub of Malvaceae eg cotton, cacao |
malaria.tools | Plasmodium co-expression and co-function networks |
MBKbase | Plant Molecular Breeding Knowledgebase |
ncRNA-eQTL | eQTL analysis of ncRNAs |
OGRDB | Open germline receptor database |
oRNAment | Predicted RBP binding sites in complete transcriptomes |
PADS Arsenal | Prokaryotic antiviral defense systems |
PathBank | Pathways in model organisms |
PGG.Han | Han Chinese genomes |
PhaSepDB | Phase separation related proteins |
PhaSepPro | Phase separation related proteins |
PhenoModifier | Genetic modifiers of human disorders |
PDBe-KB | Structural and functional annotations of the PDB |
PmiREN | Plant MicroRNA Encyclopedia |
Pro-Carb | Protein–carbohydrate interactions |
QTLbase | Quantitative Trait Loci across human phenotypes |
SEAweb | Small RNA Expression Atlas |
snoDB | Human snoRNAs |
SNP2APA | SNPs and alternative polyadenylation in cancer |
SpatialDB | Spatially resolved transcriptome |
SyntDB | lncRNAs and their evolutionary relationships in primates |
TerrestrialMetagenomeDB | Terrestrial metagenome metadata |
Thera-SAbDab | Therapeutic antibodies |
T-psi-C | Experimentally determined tRNA sequences |
TSEA-DB | Tissue specificity of GWAS traits and phenotypes |
VARIDT | Variability of Drug Transporter Database |
VDJbase | Genotype and haplotype data from AIRR sequencing |
VISDB | Virus Integration Site DataBase |
YEASTRACT+ | Transcription regulation in yeasts |
DNAproDB | DNA–protein complex structure analysis |
EnhancerAtlas | Enhancers in nine species |
GWAS Central | GWAS datasets |
MatrisomeDB | Extracellular matrix components |
MIBiG | Biosynthetic Gene Clusters of Known Function |
MirGeneDB | Animal miRNA complements |
MSDB | Microsatellites from all sequenced genomes |
Ohnologs | Vertebrate ohnologs |
PolyASite | RNA polyadenylation sites |
WALTZ-DB | Amyloidogenic peptide sequences |
2020年,遇见更好的自己