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核酸研究17年接受的数据库名单（貌似还需要认领下），排名不分先后。弱弱的说下申请一共有200多，通过了100左右，通过率在30%左右。更为详细的资料去官网查看吧。
核（fu）酸（bu）研（si）究2017年在线工具名单
| Web Server name | URL | Brief description |
| agriGO v2 | http://systemsbiology.cau.edu.cn/agriGOv2/ | GO analysis for agricultural species |
| AMMOS2 | http://drugmod.rpbs.univ-paris-diderot.fr/ammosHome.php | Energy minimization of protein–ligand complexes |
| antiSMASH | http://antismash.secondarymetabolites.org/ | Secondary metabolite biosynthetic gene cluster mining in bacterial and fungal genomes |
| ARTS | http://arts.ziemertlab.com | Biosynthetic gene cluster mining for novel antibiotics |
| BAR 3.0 | http://bar.biocomp.unibo.it/bar3 | Protein structure and function annotation |
| BepiPred-2.0 | http://www.cbs.dtu.dk/services/BepiPred-2.0/ | B-cell epitope prediction from a protein sequence |
| BioAtlas | http://bioatlas.compbio.sdu.dk | Visualization of microbiome and metagenome locations |
| BIS2Analyzer | http://www.lcqb.upmc.fr/BIS2Analyzer/ | Analysis of coevolving amino-acid pairs in protein sequences |
| BusyBee | https://ccb-microbe.cs.uni-saarland.de/busybee | Metagenome binning |
| CAFE | https://github.com/younglululu/CAFE | Stand-alone program for alignment-free comparison of metagenome data |
| Cancer PanorOmics | http://panoromics.irbbarcelona.org | Mapping of cancer mutations to 3D protein–protein interaction sites |
| COFACTOR | http://zhanglab.ccmb.med.umich.edu/COFACTOR/ | Structure-based protein function annotation |
| compleXView | http://xvis.genzentrum.lmu.de/compleXView | Protein-protein interaction based on affinity purification mass spectrometry |
| ConTra v3 | http://bioit2.irc.ugent.be/contra/v3 | Transcription factor binding sites analysis |
| CPC2 | http://cpc2.cbi.pku.edu.cn | Protein coding potential of RNA transcripts |
| CSPADE | http://cspade.fimm.fi/ | Chemoinformatics bioactivity assay visualization |
| CSTEA | http://comp-sysbio.org/cstea/ | Analysis of time-series gene expression data on cell state transitions |
| DEOGEN2 | http://deogen2.mutaframe.com/ | Prediction of deleterious mutations in proteins |
| DNAproDB | http://dnaprodb.usc.edu | Structural analysis of DNA–protein complexes |
| DSSR | http://jmol.x3dna.org | DNA and RNA structure visualization |
| DynOmics | http://dyn.life.nthu.edu.tw/oENM/ | Protein molecular dynamics using elastic network models |
| EBISearch | http://www.ebi.ac.uk/ebisearch | Web services text search in EMBL-EBI data |
| FireProt | http://loschmidt.chemi.muni.cz/fireprot | Design of thermostable proteins |
| GalaxyHomomer | http://galaxy.seoklab.org/cgi-bin/submit.cgi?type=HOMOMER | Prediction of protein homo-oligomer structure |
| GASS-WEB | http://gass.unifei.edu.br/ | Identification of enzyme active sites |
| GeMSTONE | http://gemstone.yulab.org/ | Genetic variant prioritization in human disease |
| Gene ORGANizer | http://geneorganizer.huji.ac.il | Linkage of human genes to their affected body organs |
| GenProBiS | http://genprobis.insilab.org | Mapping of SNPs to protein binding sites |
| GEPIA | http://gepia.cancer-pku.cn/ | Analysis of differential gene expression in cancer |
| GeSeq | https://chlorobox.mpimp-golm.mpg.de/geseq.html | Annotation of chloroplast genomes |
| GibbsCluster | http://www.cbs.dtu.dk/services/GibbsCluster-2.0 | Detection of protein short linear motifs |
| GPCR-SSFE 2.0 | http://www.ssfa-7tmr.de/ssfe2/ | Homology modeling of G-protein coupled receptors |
| GWAB | http://www.inetbio.org/gwab/ | Network-based genome wide association analysis |
| HDOCK | http://hdock.phys.hust.edu.cn/ | Protein–protein and protein–DNA/RNA docking |
| HGVA | http://bioinfodev.hpc.cam.ac.uk/web-apps/hgva | Archive of human genetic variant annotations |
| HH-MOTiF | http://chimborazo.biochem.mpg.de/ | Detection of protein short linear motifs |
| I-TASSER-MR | http://zhanglab.ccmb.med.umich.edu/I-TASSER-MR/ | Protein structure modeling for X-ray crystallography |
| INTAA | http://bioinfo.uochb.cas.cz/INTAA/ | Analysis of amino acid interaction energies |
| IntaRNA 2.0 | http://rna.informatik.uni-freiburg.de/IntaRNA/Input.jsp | Prediction of interactions between RNA molecules |
| IslandViewer 4.0 | http://www.pathogenomics.sfu.ca/islandviewer4/ | Prediction of bacterial genomic islands (horizontal gene transfer) |
| kpLogo | http://kplogo.wi.mit.edu/ | Detection and visualization of short sequence motifs |
| LigParGen | http://jorgensenresearch.com/ligpargen | Force field parameters for molecular dynamics |
| LimTox | http://limtox.bioinfo.cnio.es | Text mining for compound toxicity |
| mCSM-NA | http://structure.bioc.cam.ac.uk/mcsm_na | Prediction of protein mutation effect on nucleic acid binding affinity |
| MicrobiomeAnalyst | http://microbiomeanalyst.ca | Analysis of microbiome data |
| MinePath | http://www.minepath.org | Differential expression analysis for regulatory network subpaths |
| ModFOLD6 | http://www.reading.ac.uk/bioinf/ModFOLD/ | Protein structure quality assessment |
| mTCTScan | http://jjwanglab.org/mTCTScan | Mutation prioritization for cancer drug response |
| MutaGene | https://www.ncbi.nlm.nih.gov/projects/mutagene/ | Visualization and analysis of mutational profiles in cancer |
| NNAlign-2.0 | http://www.cbs.dtu.dk/services/NNAlign-2.0 | Detection of ligand motifs for receptor–ligand interactions |
| NOREVA | http://server.idrb.cqu.edu.cn/noreva/ | Evaluation of data normalization methods for mass spectrometry based metabolomics data |
| Olelo | http://www.hpi.de/plattner/olelo | Text mining in PubMed |
| OmicSeq | http://www.omicseq.org | Search for omics data in major repositories |
| P4P | http://sing.ei.uvigo.es/p4p | Bacterial strain classification based on peptide datasets |
| Pathview | http://pathview.uncc.edu/ | Visualization and annotation of metabolic pathways |
| pepATTRACT | http://bioserv.rpbs.univ-paris-diderot.fr/services/pepATTRACT | Prediction of protein–peptide docking |
| PharmMapper | http://lilab.ecust.edu.cn/pharmmapper | Drug target search using pharmacophore mapping |
| PhD-SNPg | http://snps.biofold.org/phd-snpg | Deleterious SNP classification |
| PIGSPro | http://cassandra.med.uniroma1.it/AbPrediction/web/pigs.php | Modeling of immunoglobulin variable domains |
| plantiSMASH | http://plantismash.secondarymetabolites.org | Detection of biosynthetic gene clusters in plants |
| PMut | http://mmb.irbbarcelona.org/PMut/ | Prediction of disease potential for protein mutations |
| Prism3 | http://prism3.magarveylab.ca/prism | Prediction of natural product structures from biosynthetic gene clusters |
| ProteinsAPI | http://www.ebi.ac.uk/proteins/api | Web service for protein data from UniProtKB |
| ProteinsPlus | http://proteins.plus | Structure-based modeling of proteins |
| ProteoSign | http://bioinformatics.med.uoc.gr/ProteoSign | Protein differential abundance analysis |
| ReFOLD | http://www.reading.ac.uk/bioinf/ReFOLD/ | Protein structure refinement |
| RegulatorTrail | https://regulatortrail.bioinf.uni-sb.de | Analysis of transcription factors and target genes |
| RiPPMiner | http://www.nii.ac.in/rippminer.html | Prediction of chemical structures for ribosomally synthesized and post translationally modified peptides |
| RNA workbench | https://github.com/bgruening/galaxy-rna-workbench | Stand-alone collection of tools for analyzing RNAseq and RNA sequence data |
| RNA-MoIP | http://rnamoip.cs.mcgill.ca/ | Prediction of RNA 2D and 3D structure |
| SBSPKSv2 | http://www.nii.ac.in/sbspks2.html | Analysis of polyketide synthases |
| SCENERY | http://mensxmachina.org/en/software/ | Network reconstruction from cytometry data |
| SDM | http://structure.bioc.cam.ac.uk/sdm2 | Prediction of stability in protein mutants |
| SeMPI | http://www.pharmaceutical-bioinformatics.de/sempi/ | Prediction of polyketide synthase products from biosynthetic gene clusters |
| SLiMSearch | http://slim.ucd.ie/slimsearch/ | Detection of protein short linear motifs |
| SODA | http://protein.bio.unipd.it/soda/ | Prediction of solubility in protein mutants |
| SpartaABC | http://spartaabc.tau.ac.il/webserver | Sequence simulation with indels |
| ThreaDomEx | http://zhanglab.ccmb.med.umich.edu/ThreaDomEx | Prediction of protein domains and domain boundaries |
| Tools at EMBL-EBI | http://www.ebi.ac.uk/Tools/webservices/ | Web service tools from EMBL-EBI |
| TraitRateProp | http://traitrate.tau.ac.il/prop | Test of sequence evolution association with phenotype |
| TRAPP | http://trapp.h-its.org | Analysis of protein binding site dynamics |
| VCF.Filter | https://biomedical-sequencing.at/VCFFilter/ | Stand-alone program for filtering and annotating genetic variants in vcf files |
| Web3DMol | http://web3dmol.duapp.com/ | Protein structure visualization |
| WebGestalt | http://www.webgestalt.org | Gene set functional enrichment analysis |
| WoPPER | http://WoPPER.ba.itb.cnr.it/ | Detection of bacterial genome regions with coordinated gene expression changes |
| XSuLT | http://structure.bioc.cam.ac.uk/xsult | Annotation and visualization of protein multiple sequence alignment |
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TCGA | 小工具 | 数据库 |组装| 注释 | 基因家族 | Pvalue
基因预测 |bestorf | sci | NAR | 在线工具 | 生存分析 | 热图
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