NAR19年度数据库包括168个,其中64个是新的,92个是站内发表更新过的,12个是站外发表站内更新的。
名单如下
Database | Brief descriptiona |
AleDB | Mutations from Adaptive Laboratory Evolution experiments |
AlloMAPS | Allosteric signaling and mutations in proteins |
AmtDB | Ancient mitochondrial DNA |
Ancestral Genomes | Reconstructed ancestral genomes |
AWESOME | Impact of SNPs on post-translational modifications |
Bactome | Sequences, transcriptomes and phenotypes of clinical isolates of Pseudomonas auruginosa |
CAGm | Catalog of all germline microsatellites |
CancerSEA | Cancer single-cell state atlas |
CancerSplicingQTL | Splicing quantitative trait loci in cancer |
CellMarker | Cell markers in human and mouse |
Cell Model Passports | Human cancer cell models |
ChIPprimersDB | qPCR oligonucleotide primers for chromatin immunoprecipitation (ChIP) |
CMAUP | Collective molecular activities of useful plants |
CoevDB | Pairwise nucleotide coevolution |
CRISPRlnc | Validated CRISPR/Cas9 sgRNAs for model organism lncRNAs |
Cucurbit Genomics Database | Genomics of the Cucurbitaceae family |
dbAMP | Antimicrobial peptide sequences, structures and properties |
DSMNC | Database of somatic mutations in normal cells |
EDK | Editome disease knowledgebase |
EncoMPASS | Encyclopedia of membrane proteins analyzed by structure and symmetry. |
EndoDB | Gene expression in endothelial cells |
ENPD | Eukaryotic nucleic acid binding proteins |
ETCM | Encyclopedia of Traditional Chinese Medicine |
EVmiRNA | miRNA in extracellular vesicles |
EWAS Atlas | Epigenome-Wide Association Studies |
EWASdb | Epigenome-Wide Association Studies Atlas |
FusionGDB | Fusion Gene annotation DataBase |
gcMeta | Microbiome research data |
Genome Properties | Pathways and other properties represented by sets of protein families |
HACER | Human ACtive Enhancer to interpret Regulatory variants |
HmtVar | Human mitochondrial DNA variants |
iDOG | Dog data on genes, SNPs, diseases etc. |
iProX | Proteomics datasets |
jPOSTdb | Japan ProteOme STandard environment |
KinaMetrix | Protein kinase models, conformations and ligands |
liqDB | Small RNA expression profiles in biofluids |
LncBook | Human lncRNA knowledgebase |
MemProtMD | Membrane Proteins Embedded in Lipid Bilayers |
MethMotif | Transcription factor binding motifs coupled with DNA methylation profiles |
NucMap | Nucleosome positioning map across species |
OncoBase | Regulatory somatic mutations in human cancers |
OpenProt | Eukaryotic coding potential and proteomes |
Pancan-meQTL | Methylation quantitative trait loci in cancer |
PDX Finder | Patient-derived xenograft models |
PED | Plant Editosome Database |
PreMedKB | Precision medicine knowledgebase |
piRTarBase | piRNA targeting sites |
Plasmid Atlas | Plasmid annotations and metadata |
PLSDB | Plasmid annotations and metadata |
PopHumanScan | Positively selected regions of the human genome |
qPhos | Protein phosphorylation dynamics |
RetroRules | Reaction rules for synthetic biology |
RNact | Experimental and predicted protein–RNA interactions in human and mouse |
SAGD | Sex-associated gene database |
SEdb | Super-enhancer database |
SSRome | Microsatellites in all organisms |
SymMap | Traditional chinese medicine including symptom mapping |
Translocatome | Translocating human proteins |
Trips-Viz | Transcriptome browser |
UniLectin | Lectin structure and function |
ViBrism DB | Tomographic transcriptome and co-expression networks in mouse brain |
Victors | Virulence factors |
VMH | Virtual metabolic human |
YeastRGB | Expression and localization of yeast proteins |
Database | Brief descriptiona |
CADD | Combined annotation-dependent depletion |
GENCODE | Reference annotation for the human and mouse genomes. |
glycosciences.DB | Glyco-related databases |
Haemopedia | Haematopoietic expression data |
HumanNet | Human gene functional network |
LncACTdb | lncRNA–miRNA–gene interactions |
MoonDB | Known and predicted multifunctional proteins in model organisms |
OrthoInspector | Orthologous relations and phylogenetic profiling |
piRBase | piRNA function and annotation |
Stemformatics | Stem cell and other cell-specific gene expression |
UNITE | Internal transcribed spacer sequences for fungal identification |
Vesiclepedia | Extracellular vesicles |
2019年,遇见更好的自己